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### Rationale for this change There are already utilities to import tensor data from NumPy. With DLPack standard, it will work across many tensor providers. ### What changes are included in this PR? - Bind `FixedShapedTensorArray::FromTensor` in Python - Add `ImportArrayVersionedFromDLPack` and `ImportTensorVersionedFromDLPack` in C++ - Add in Python `Array.from_dlpack` and `Tensor.from_dlpack` Similar to the export, multidimensional tensor import require an explicit step through `Tensor`. - No `Array::FromTensor` or even `FixedSizeListArray::FromTensor`. IMHO it does not feel as necessary in this direction but open to anyone's take one it. ### Are these changes tested? Yes. ### Are there any user-facing changes? Yes, new APIs. * GitHub Issue: #39295 Lead-authored-by: AntoinePrv <AntoinePrv@users.noreply.github.com> Co-authored-by: Antoine Pitrou <pitrou@free.fr> Signed-off-by: Antoine Pitrou <antoine@python.org>
507 lines
18 KiB
Python
507 lines
18 KiB
Python
# Licensed to the Apache Software Foundation (ASF) under one
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# or more contributor license agreements. See the NOTICE file
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# distributed with this work for additional information
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# regarding copyright ownership. The ASF licenses this file
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# to you under the Apache License, Version 2.0 (the
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# "License"); you may not use this file except in compliance
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# with the License. You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing,
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# software distributed under the License is distributed on an
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# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
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# KIND, either express or implied. See the License for the
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# specific language governing permissions and limitations
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# under the License.
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import ctypes
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from functools import wraps
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import gc
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import pytest
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import pyarrow as pa
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from pyarrow.vendored.version import Version
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# Marks all of the tests in this module
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# Ignore these with pytest ... -m 'not numpy'
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pytestmark = pytest.mark.numpy
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np = pytest.importorskip("numpy")
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def requires_numpy_version(min_version):
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return pytest.mark.skipif(
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Version(np.__version__) < Version(min_version),
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reason=f"Test requires numpy {min_version} or later",
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)
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def PyCapsule_IsValid(capsule, name):
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return ctypes.pythonapi.PyCapsule_IsValid(ctypes.py_object(capsule), name) == 1
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def check_dlpack_export(arr, expected_arr):
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with pytest.warns(DeprecationWarning, match="unversioned DLPack capsule"):
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DLTensor = arr.__dlpack__()
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assert PyCapsule_IsValid(DLTensor, b"dltensor") is True
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result = np.from_dlpack(arr)
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np.testing.assert_array_equal(result, expected_arr, strict=True)
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assert arr.__dlpack_device__() == (1, 0)
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class DLPackForwarder:
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"""Forward ``__dlpack__`` to a wrapped object with forced keyword arguments.
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Consumers such as ``np.from_dlpack`` do not expose every ``__dlpack__``
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keyword, so this makes them reachable from a consumer's point of view.
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"""
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def __init__(self, obj, **forced):
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self._obj = obj
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self._forced = forced
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def __dlpack__(self, **kwargs):
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return self._obj.__dlpack__(**{**kwargs, **self._forced})
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def __dlpack_device__(self):
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return self._obj.__dlpack_device__()
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def check_bytes_allocated(f):
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@wraps(f)
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def wrapper(*args, **kwargs):
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gc.collect()
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allocated_bytes = pa.total_allocated_bytes()
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try:
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return f(*args, **kwargs)
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finally:
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assert pa.total_allocated_bytes() == allocated_bytes
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return wrapper
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@check_bytes_allocated
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@pytest.mark.parametrize(
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('value_type', 'np_type_str'),
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[
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(pa.uint8(), "uint8"),
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(pa.uint16(), "uint16"),
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(pa.uint32(), "uint32"),
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(pa.uint64(), "uint64"),
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(pa.int8(), "int8"),
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(pa.int16(), "int16"),
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(pa.int32(), "int32"),
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(pa.int64(), "int64"),
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(pa.float16(), "float16"),
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(pa.float32(), "float32"),
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(pa.float64(), "float64"),
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]
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)
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def test_dlpack(value_type, np_type_str):
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expected = np.array([1, 2, 3], dtype=np.dtype(np_type_str))
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arr = pa.array(expected, type=value_type)
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check_dlpack_export(arr, expected)
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t = pa.Tensor.from_numpy(expected)
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check_dlpack_export(t, expected)
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arr_sliced = arr.slice(1, 1)
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expected = np.array([2], dtype=np.dtype(np_type_str))
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check_dlpack_export(arr_sliced, expected)
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arr_sliced = arr.slice(0, 1)
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expected = np.array([1], dtype=np.dtype(np_type_str))
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check_dlpack_export(arr_sliced, expected)
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arr_sliced = arr.slice(1)
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expected = np.array([2, 3], dtype=np.dtype(np_type_str))
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check_dlpack_export(arr_sliced, expected)
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arr_zero = pa.array([], type=value_type)
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expected = np.array([], dtype=np.dtype(np_type_str))
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check_dlpack_export(arr_zero, expected)
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t = pa.Tensor.from_numpy(expected)
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check_dlpack_export(t, expected)
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@check_bytes_allocated
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@pytest.mark.parametrize('np_type',
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[np.uint8, np.uint16, np.uint32, np.uint64,
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np.int8, np.int16, np.int32, np.int64,
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np.float16, np.float32, np.float64,])
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def test_tensor_dlpack(np_type):
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arr = np.array([1, 2, 3, 4, 5, 6, 1, 1])
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expected = np.array(arr, dtype=np_type).reshape((2, 2, 2), order='C')
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t = pa.Tensor.from_numpy(expected)
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check_dlpack_export(t, expected)
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expected = np.array(arr, dtype=np_type).reshape((2, 2, 2), order='F')
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t = pa.Tensor.from_numpy(expected)
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check_dlpack_export(t, expected)
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def multidim_arrays():
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np_arr = np.arange(12, dtype=np.int32).reshape(3, 2, 2)
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values = pa.array(np_arr.ravel(), type=pa.int32())
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nested_list = pa.FixedSizeListArray.from_arrays(
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pa.FixedSizeListArray.from_arrays(values, 2), 2)
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return [
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pytest.param(nested_list, np_arr, id="nested_fixed_size_list"),
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pytest.param(
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pa.FixedShapeTensorArray.from_numpy_ndarray(np_arr),
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np_arr,
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id="fixed_shape_tensor",
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),
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]
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize(('arr', 'expected'), multidim_arrays())
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def test_array_to_tensor_dlpack(arr, expected):
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tensor = arr.to_tensor()
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# A Tensor sharing an Array buffer is immutable, so it can only be exported
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# through the versioned DLPack protocol.
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assert not tensor.is_mutable
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result = np.from_dlpack(DLPackForwarder(tensor, max_version=(1, 0)))
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np.testing.assert_array_equal(result, expected, strict=True)
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assert tensor.__dlpack_device__() == (1, 0)
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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def test_fixed_shape_tensor_array_dlpack_permuted():
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# A non-trivial permutation makes to_tensor() produce a non-row-major
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# tensor: each row-major [3, 2] block is exposed as a logical [2, 3] cell.
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storage = pa.FixedSizeListArray.from_arrays(
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pa.array(range(24), type=pa.int32()), 6)
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arr = pa.ExtensionArray.from_storage(
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pa.fixed_shape_tensor(pa.int32(), [3, 2], permutation=[1, 0]), storage)
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tensor = arr.to_tensor()
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assert tensor.shape == (4, 2, 3)
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assert not tensor.is_contiguous
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# expected[i, j, k] == i * 6 + k * 2 + j (numpy is only the DLPack consumer)
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expected = np.arange(24, dtype=np.int32).reshape(4, 3, 2).transpose(0, 2, 1)
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result = np.from_dlpack(DLPackForwarder(arr, max_version=(1, 0)))
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np.testing.assert_array_equal(result, expected, strict=True)
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assert arr.__dlpack_device__() == (1, 0)
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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def test_fixed_shape_tensor_scalar_dlpack():
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np_arr = np.arange(12, dtype=np.int32).reshape(3, 2, 2)
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arr = pa.FixedShapeTensorArray.from_numpy_ndarray(np_arr)
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scalar = arr[1]
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assert isinstance(scalar, pa.FixedShapeTensorScalar)
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# __dlpack_device__ reads the storage array's device, without building a Tensor.
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assert scalar.__dlpack_device__() == (1, 0)
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result = np.from_dlpack(DLPackForwarder(scalar, max_version=(1, 0)))
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np.testing.assert_array_equal(result, np_arr[1], strict=True)
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def multidim_arrays_with_nulls():
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np_arr = np.arange(6, dtype=np.int32).reshape(3, 2)
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# Masked entries keep defined values in the child array, so the tensor
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# contents stay fully predictable.
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nested_list = pa.FixedSizeListArray.from_arrays(
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pa.array(np_arr.ravel(), type=pa.int32()), 2,
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mask=pa.array([False, True, False]))
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return [
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pytest.param(nested_list, np_arr, id="fixed_size_list"),
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pytest.param(
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pa.ExtensionArray.from_storage(
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pa.fixed_shape_tensor(pa.int32(), [2]), nested_list),
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np_arr,
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id="fixed_shape_tensor",
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),
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]
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize(('arr', 'expected'), multidim_arrays_with_nulls())
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def test_array_to_tensor_dlpack_nulls(arr, expected):
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with pytest.raises(pa.ArrowInvalid, match="Array contains nulls"):
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arr.to_tensor()
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tensor = arr.to_tensor(allow_nulls=True)
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result = np.from_dlpack(DLPackForwarder(tensor, max_version=(1, 0)))
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np.testing.assert_array_equal(result, expected, strict=True)
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def dlpack_objects():
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arr = pa.array([1, 2, 3], type=pa.int32())
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return [
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pytest.param(arr, id="array"),
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pytest.param(arr.slice(1), id="sliced_array"),
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pytest.param(pa.array([], type=pa.int32()), id="empty_array"),
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pytest.param(
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pa.Tensor.from_numpy(np.array([[1, 2], [3, 4]], dtype=np.int32)),
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id="tensor",
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),
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]
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@check_bytes_allocated
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@pytest.mark.parametrize('obj', dlpack_objects())
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@pytest.mark.parametrize('max_version', [None, (0, 8)])
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def test_dlpack_legacy_capsule(obj, max_version):
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with pytest.warns(DeprecationWarning, match="unversioned DLPack capsule"):
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capsule = obj.__dlpack__(max_version=max_version)
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assert PyCapsule_IsValid(capsule, b"dltensor") is True
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def immutable_tensor():
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np_arr = np.array([[1, 2], [3, 4]], dtype=np.int32)
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np_arr.flags.writeable = False
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tensor = pa.Tensor.from_numpy(np_arr)
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assert not tensor.is_mutable
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return tensor
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@check_bytes_allocated
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@pytest.mark.parametrize('max_version', [None, (0, 8)])
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def test_dlpack_legacy_capsule_immutable_tensor(max_version):
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tensor = immutable_tensor()
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with pytest.raises(NotImplementedError,
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match="Legacy DLPack support is not implemented "
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"for immutable tensors"):
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tensor.__dlpack__(max_version=max_version)
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@check_bytes_allocated
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@pytest.mark.parametrize('max_version', [(1, 0), (1, 3), (2, 0)])
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@pytest.mark.parametrize('copy', [None, False, True])
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def test_dlpack_versioned_capsule_immutable_tensor(max_version, copy):
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tensor = immutable_tensor()
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capsule = tensor.__dlpack__(max_version=max_version, copy=copy)
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assert PyCapsule_IsValid(capsule, b"dltensor_versioned") is True
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@check_bytes_allocated
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@pytest.mark.parametrize('obj', dlpack_objects())
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@pytest.mark.parametrize('max_version', [None, (0, 8)])
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@pytest.mark.parametrize('copy', [False, True])
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def test_dlpack_legacy_capsule_copy_not_supported(obj, max_version, copy):
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with pytest.raises(BufferError, match="copy argument is not supported"):
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obj.__dlpack__(max_version=max_version, copy=copy)
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@check_bytes_allocated
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@pytest.mark.parametrize('obj', dlpack_objects())
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@pytest.mark.parametrize('max_version', [(1, 0), (1, 3), (2, 0)])
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@pytest.mark.parametrize('copy', [None, False, True])
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def test_dlpack_versioned_capsule(obj, max_version, copy):
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capsule = obj.__dlpack__(max_version=max_version, copy=copy)
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assert PyCapsule_IsValid(capsule, b"dltensor_versioned") is True
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize('obj', dlpack_objects())
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def test_dlpack_versioned_roundtrip(obj):
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expected = np.from_dlpack(DLPackForwarder(obj, max_version=None))
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for copy in [None, False, True]:
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result = np.from_dlpack(
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DLPackForwarder(obj, max_version=(1, 0), copy=copy))
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np.testing.assert_array_equal(result, expected, strict=True)
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@requires_numpy_version("2.2.5")
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@check_bytes_allocated
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def test_dlpack_copy_is_writeable():
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# NumPy did not set the writeable flag on DLPack imports before 2.2.5.
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arr = pa.array([1, 2, 3], type=pa.int32())
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# Arrow arrays are immutable, so a shared export is read-only
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shared = np.from_dlpack(DLPackForwarder(arr, max_version=(1, 3)))
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assert not shared.flags.writeable
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# A copy is solely owned by the consumer, who may mutate it
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copied = np.from_dlpack(DLPackForwarder(arr, max_version=(1, 3), copy=True))
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assert copied.flags.writeable
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copied[0] = 100
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assert arr.to_pylist() == [1, 2, 3]
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def test_dlpack_not_supported():
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arr = pa.array([1, None, 3])
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with pytest.raises(TypeError, match="Can only use DLPack "
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"on arrays with no nulls."):
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np.from_dlpack(arr)
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arr = pa.array(
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[[0, 1], [3, 4]],
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type=pa.list_(pa.int32())
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)
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with pytest.raises(TypeError, match="DataType is not compatible with DLPack spec"):
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np.from_dlpack(arr)
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arr = pa.array([])
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with pytest.raises(TypeError, match="DataType is not compatible with DLPack spec"):
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np.from_dlpack(arr)
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# DLPack doesn't support bit-packed boolean values
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arr = pa.array([True, False, True])
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with pytest.raises(TypeError, match="Bit-packed boolean data type "
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"not supported by DLPack."):
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np.from_dlpack(arr)
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def test_dlpack_cuda_not_supported():
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cuda = pytest.importorskip("pyarrow.cuda", exc_type=ImportError)
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schema = pa.schema([pa.field('f0', pa.int16())])
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a0 = pa.array([1, 2, 3], type=pa.int16())
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batch = pa.record_batch([a0], schema=schema)
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cbuf = cuda.serialize_record_batch(batch, cuda.Context(0))
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cbatch = cuda.read_record_batch(cbuf, batch.schema)
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carr = cbatch["f0"]
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# CudaBuffers not yet supported
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with pytest.raises(NotImplementedError, match="DLPack support is implemented "
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"only for buffers on CPU device."):
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np.from_dlpack(carr)
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with pytest.raises(NotImplementedError, match="DLPack support is implemented "
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"only for buffers on CPU device."):
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carr.__dlpack_device__()
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize('np_type',
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[np.uint8, np.uint16, np.uint32, np.uint64,
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np.int8, np.int16, np.int32, np.int64,
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np.float16, np.float32, np.float64])
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def test_tensor_from_dlpack(np_type):
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def make_array():
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base = np.arange(24, dtype=np_type).reshape((4, 6))
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array = base[::2, 1::2]
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assert not array.flags['C_CONTIGUOUS']
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return array
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# Non-contiguous, strided slice: DLPack carries explicit strides, so this
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# should not need a copy on export.
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tensor = pa.Tensor.from_dlpack(make_array())
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assert isinstance(tensor, pa.Tensor)
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gc.collect() # Attempts to free input array memory
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np.testing.assert_array_equal(tensor.to_numpy(), make_array(), strict=True)
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize('np_type',
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[np.uint8, np.uint16, np.uint32, np.uint64,
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np.int8, np.int16, np.int32, np.int64,
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np.float16, np.float32, np.float64])
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def test_array_from_dlpack(np_type):
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expected = np.array([1, 2, 3, 4, 5], dtype=np_type)
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arr = pa.Array.from_dlpack(expected)
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arr.validate(full=True)
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assert isinstance(arr, pa.Array)
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np.testing.assert_array_equal(arr.to_numpy(), expected, strict=True)
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@requires_numpy_version("2.1.0")
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@check_bytes_allocated
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@pytest.mark.parametrize('np_type',
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[np.uint8, np.uint16, np.uint32, np.uint64,
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np.int8, np.int16, np.int32, np.int64,
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np.float16, np.float32, np.float64])
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def test_fixed_shape_tensor_array_from_dlpack(np_type):
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source = np.arange(12, dtype=np_type).reshape((3, 2, 2))
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arr = pa.FixedShapeTensorArray.from_dlpack(source)
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arr.validate(full=True)
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assert arr.type == pa.fixed_shape_tensor(pa.from_numpy_dtype(np_type), [2, 2])
|
|
assert arr.to_pylist() == [[0, 1, 2, 3], [4, 5, 6, 7], [8, 9, 10, 11]]
|
|
|
|
# Zero-copy import: mutating the source is visible through the array.
|
|
source[0, 0, 0] = 100
|
|
assert arr.to_pylist()[0] == [100, 1, 2, 3]
|
|
|
|
copied = pa.FixedShapeTensorArray.from_dlpack(source, copy=True)
|
|
source[0, 0, 0] = 0
|
|
assert copied.to_pylist()[0] == [100, 1, 2, 3]
|
|
|
|
|
|
@requires_numpy_version("2.1.0")
|
|
@check_bytes_allocated
|
|
@pytest.mark.parametrize('np_type', [np.uint8, np.int32, np.float64])
|
|
def test_fixed_shape_tensor_array_from_dlpack_transposed(np_type):
|
|
source = np.arange(12, dtype=np_type).reshape((3, 2, 2)).transpose(0, 2, 1)
|
|
arr = pa.FixedShapeTensorArray.from_dlpack(source)
|
|
arr.validate(full=True)
|
|
assert arr.type == pa.fixed_shape_tensor(
|
|
pa.from_numpy_dtype(np_type), [2, 2], permutation=[1, 0])
|
|
np.testing.assert_array_equal(arr.to_numpy_ndarray(), source)
|
|
|
|
# Zero-copy import: mutating the source is visible through the array.
|
|
source[0, 0, 0] = 100
|
|
np.testing.assert_array_equal(arr.to_numpy_ndarray(), source)
|
|
|
|
copied = pa.FixedShapeTensorArray.from_dlpack(source, copy=True)
|
|
expected = source.copy()
|
|
source[0, 0, 0] = 0
|
|
np.testing.assert_array_equal(copied.to_numpy_ndarray(), expected)
|
|
|
|
|
|
@requires_numpy_version("2.1.0")
|
|
@check_bytes_allocated
|
|
def test_fixed_shape_tensor_array_from_dlpack_not_first_major():
|
|
# The outermost dimension indexes the tensor elements, so it must remain
|
|
# the major one.
|
|
source = np.arange(12, dtype=np.int32).reshape((3, 2, 2)).transpose(1, 0, 2)
|
|
with pytest.raises(pa.ArrowInvalid,
|
|
match="Only first-major tensors can be zero-copy"):
|
|
pa.FixedShapeTensorArray.from_dlpack(source)
|
|
|
|
|
|
@requires_numpy_version("2.1.0")
|
|
@check_bytes_allocated
|
|
def test_from_dlpack_zero_copy():
|
|
expected = np.array([1, 2, 3], dtype=np.int64)
|
|
tensor = pa.Tensor.from_dlpack(expected)
|
|
result = tensor.to_numpy()
|
|
# Zero-copy import: mutating the source is visible through the tensor.
|
|
expected[0] = 100
|
|
assert result[0] == 100
|
|
# Same for mutating the result
|
|
result[1] = 42
|
|
assert expected[1] == 42
|
|
|
|
|
|
@requires_numpy_version("2.1.0")
|
|
@check_bytes_allocated
|
|
def test_from_dlpack_explicit_copy():
|
|
expected = np.array([1, 2, 3], dtype=np.int64)
|
|
tensor = pa.Tensor.from_dlpack(expected, copy=True)
|
|
result = tensor.to_numpy()
|
|
expected[0] = 100
|
|
# The data was copied, so mutating the source is not visible.
|
|
assert result[0] == 1
|
|
|
|
|
|
def test_from_dlpack_no_dlpack_method():
|
|
with pytest.raises(AttributeError):
|
|
pa.Tensor.from_dlpack(object())
|
|
|
|
|
|
@requires_numpy_version("2.1.0")
|
|
@check_bytes_allocated
|
|
def test_array_from_dlpack_multi_dim_not_supported():
|
|
expected = np.arange(6, dtype=np.int32).reshape((2, 3))
|
|
with pytest.raises(
|
|
pa.ArrowInvalid,
|
|
match="Only contiguous one dimensional tensor can be imported as arrays",
|
|
):
|
|
pa.Array.from_dlpack(expected)
|